Basic Information
VIS ID
TVIS30006418
Fusion event
HIV-TRA integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q11.2
Reference genome
End
22462453/21994213 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-6717/Upstream/970827; hsa-mir-1185-1/Downstream/962737;
Nearby gene
OR4E1(No orient, 323221)
Upstream sequence
ataaaactaagcatgcacttatcatatgatcacaccattgtgcattggacatctatcccagtaacattcacataaagtcttatacaacattcatagtagc
Downstream sequence
tttattcataattgccaaaaactggaatcaacctagatatttttcaacgggtaaatggttaaataaactatcatagttcataccatggaataatatgaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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