Basic Information
VIS ID
TVIS30006423
Fusion event
HIV-LOC101926933 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
23404205/22934996 (Hg38)
End
23404205/22934996 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LOC101926933
Nearest miRNA
hsa-mir-6717/Upstream/1911610; hsa-mir-1185-1/Downstream/21954;
Nearest TSS
ENST00000550708/Upstream/5351; ENST00000557615/Downstream/13108;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/5453, chr14-CpG: 47/Downstream/21777
Upstream sequence
gagcccaggagctcgaggtcagcctgggcaacacgatgagaccttttcttaaaaaaaaaaaaaaaagatacaagaaTATCTAGTCtcatcactgagttat
Downstream sequence
ttagtattattctgaaaaatccaatataataagattggaaatagaaaaaaaggggttacaacttttaggaagggagaggtaaatttatcattatttgtag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate