VISDB Viral Integration Site DataBase

VIS ID

TVIS30006424

Fusion event

HIV-PSMB5 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr14

Cytoband

q11.2

Reference genome

Start

End

23490144/23020935 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-142-3p ; hsa-mir-18a-5p ; hsa-mir-423-3p ; hsa-mir-30e-5p ; hsa-mir-221-3p ; hsa-mir-676-5p ; hsa-mir-106a-3p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-593-5p ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-767-5p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-6741-3p ; hsa-mir-183-5p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-5197-5p ; hsa-mir-4482-3p ; hsa-mir-7159-3p ; hsa-mir-130b-5p ; hsa-mir-5571-5p ; hsa-mir-651-3p ; hsa-mir-488-3p ; hsa-mir-506-3p ; hsa-mir-124-3p ; hsa-mir-3679-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-361-3p ; hsa-mir-6877-3p ; hsa-mir-6819-3p ; hsa-mir-6873-3p ; hsa-mir-6867-3p ; hsa-mir-6868-3p ; hsa-mir-6749-3p ; hsa-mir-6781-3p ; hsa-mir-2682-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-3605-3p ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-1248 ; hsa-mir-1237-3p ; hsa-mir-6747-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-6752-3p ; hsa-mir-5193 ; hsa-mir-4667-3p ; hsa-mir-1470 ; hsa-mir-6778-3p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-103a-2-5p ; hsa-mir-1229-3p ; hsa-mir-1914-5p ; hsa-mir-192-5p ; hsa-mir-215-5p ; hsa-mir-218-5p ; hsa-mir-5008-3p ; hsa-mir-636 ; hsa-mir-6737-3p ; hsa-mir-7157-3p

Nearest miRNA

hsa-mir-4707/Upstream/63906; hsa-mir-1185-1/Downstream/367661;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/10612, chr14-CpG: 80/Downstream/26960

Nearby gene

PSMB5(No orient, 4916)

Upstream sequence

AGACTAAGCTATGAGCGCAAACTCAAGACTCAAGGGAGACATGGTGATTATGAGCCCTCCCACATAACCATGGTGCTCAGAGGATTCCCTCTAATCAGAC

Downstream sequence

AATACCACACATCACCGCTGGAGATAAGCTGCTGTGAAAAAAAGCCTGTGTATTGTGTGAAACTCTGTATGCATGGGGAGGCTTAGAGTGCATAGGTGTC