VISDB Viral Integration Site DataBase

VIS ID

TVIS30006426

Fusion event

HIV-BCL2L2-PABPN1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr14

Cytoband

q11.2

Reference genome

Start

End

23787865/23318656 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-144-3p ; hsa-mir-629-3p ; hsa-mir-3127-3p ; hsa-mir-4320 ; hsa-mir-3692-3p ; hsa-mir-5089-5p ; hsa-mir-6756-3p ; hsa-mir-6871-5p ; hsa-mir-625-5p ; hsa-mir-1915-3p ; hsa-mir-3179 ; hsa-mir-3202 ; hsa-mir-4271 ; hsa-mir-4716-3p ; hsa-mir-4725-3p ; hsa-mir-6764-5p ; hsa-mir-6783-5p ; hsa-mir-6794-5p ; hsa-mir-6798-5p ; hsa-mir-6780b-5p ; hsa-mir-141-5p ; hsa-mir-518a-5p ; hsa-mir-527 ; hsa-mir-1180-3p ; hsa-mir-548v ; hsa-mir-7161-3p ; hsa-mir-214-3p ; hsa-mir-761 ; hsa-mir-922 ; hsa-mir-3619-5p ; hsa-mir-3679-3p ; hsa-mir-6757-3p ; hsa-mir-6867-3p ; hsa-mir-4713-5p ; hsa-mir-4291 ; hsa-mir-3115 ; hsa-mir-5193 ; hsa-mir-101-5p ; hsa-mir-140-3p ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-6868-3p ; hsa-mir-3124-3p ; hsa-mir-1248 ; hsa-mir-1237-3p ; hsa-mir-5571-5p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-877-3p ; hsa-mir-3199 ; hsa-mir-4459 ; hsa-mir-4484 ; hsa-mir-4514 ; hsa-mir-4652-5p ; hsa-mir-4690-5p ; hsa-mir-4692 ; hsa-mir-4722-5p ; hsa-mir-4779 ; hsa-mir-488-3p ; hsa-mir-5681a ; hsa-mir-6081 ; hsa-mir-6730-5p ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-8052 ; hsa-mir-940

Nearest miRNA

hsa-mir-4707/Upstream/361627; hsa-mir-1185-1/Downstream/69940;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/15963, chr14-CpG: 73/Downstream/2347

Upstream sequence

gcctcagcctcccaagtagctgggcagggactacaggcacacgccactttgcccagctaatttttgtatttttagtggagaatgggttttgccatattgc

Downstream sequence

ccaggctggttttgaactcctggactcaagcaatctggctcccaaagtgttgtgagccactccgcctggccttaagaatctcaccattttaaaagctttt