Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene242704372418915724213473242139552423235224216852242324542418039524190416241802192418896424171853241802572418914324195687242122202421715524209583242138692417846524182741241941502419760324170851241736532420569724208362241870032418961624213937242160702420682024208191241984832419953724198433241990902420141524201564242056472420570624220644
Basic Information
VIS ID
TVIS30006427
Fusion event
HIV-NEDD8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q12
Reference genome
GRCh37/hg19
Start
24689850/24220644 (Hg38)
End
24689850/24220644 (Hg38)
Orient
+
Location type
Intronic
Target gene
NEDD8
miRNAs that regulate target gene
hsa-mir-1276 ; hsa-mir-133a-5p ; hsa-mir-4311 ; hsa-mir-583
Nearest miRNA
hsa-mir-208a/Upstream/77079; hsa-mir-1185-1/Downstream/2687998;
Nearest TSS
ENST00000550708/Upstream/1918; ENST00000559801/Downstream/11358;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/7013, chr14-CpG: 28/Downstream/11796
Upstream sequence
ctcatgggctcaagtgatcctcctgcctcggcctcccaaagagctgggattacaggcatgagccaccttgcccagccattgaacactttctaagggtcag
Downstream sequence
taactatgatcagcatcttacatgcatcacatttaatcctcccagtatttatgagatatggactattactatttccattttatagatgagaaaaataagc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate