VISDB Viral Integration Site DataBase

VIS ID

TVIS30006432

Fusion event

HIV-STRN3 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr14

Cytoband

q12

Reference genome

Start

End

31453679/30984473 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-125b-5p ; hsa-mir-6890-3p ; hsa-mir-5003-3p ; hsa-mir-548d-3p ; hsa-mir-548h-3p ; hsa-mir-548z ; hsa-mir-548ac ; hsa-mir-548bb-3p ; hsa-mir-507 ; hsa-mir-557 ; hsa-mir-450b-5p ; hsa-mir-3680-3p ; hsa-mir-155-5p ; hsa-mir-142-3p ; hsa-mir-500a-3p ; hsa-mir-3926 ; hsa-mir-767-5p ; hsa-mir-548ay-3p ; hsa-mir-548at-3p ; hsa-mir-4275 ; hsa-mir-7977 ; hsa-mir-383-3p ; hsa-mir-6858-3p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-6778-3p ; hsa-mir-2276-3p ; hsa-mir-1304-3p ; hsa-mir-342-3p ; hsa-mir-1281 ; hsa-mir-4485-5p ; hsa-mir-564 ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-129-5p ; hsa-mir-8055 ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-593-3p ; hsa-mir-6879-3p ; hsa-mir-4294 ; hsa-mir-215-3p ; hsa-mir-6773-3p ; hsa-mir-500b-3p

Nearest miRNA

hsa-mir-208a/Upstream/3351195; hsa-mir-1185-1/Downstream/30173;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/109205, chr14-CpG: 113/Downstream/41115

Upstream sequence

agcctgggcaacagagcgagactccatctcaaaaaaaCTTTGCTGTTAGTTAAGCCACCTAATTTTGAGAAGGATGGCTTTTAAATATCTAGGGAAAAAA

Downstream sequence

TTATTCACATTACTTAGTACTAGCTCATTAAAACCACTCATAAGGATAGCAACTATagcactttgggaggctgaggtgcgcagatcacgaggtcaagaga