Basic Information
VIS ID
TVIS30006435
Fusion event
HIV-BAZ1A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
35223563/34754357 (Hg38)
End
35223563/34754357 (Hg38)
Orient
+
Location type
Intronic
Target gene
BAZ1A
miRNAs that regulate target gene
hsa-mir-373-3p ; hsa-mir-375 ; hsa-mir-98-5p ; hsa-let-7b-5p
Nearest miRNA
hsa-mir-208a/Upstream/3739615; hsa-mir-1185-1/Downstream/2197952;
Nearest TSS
ENST00000550708/Upstream/39534; ENST00000557373/Downstream/7419;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/39367, chr14-CpG: 189/Downstream/119282
Upstream sequence
aaaaaaaaaaaaaaaattaggcatggtggcctgcacctgtggtcccagctacttgggaggctgaggtgggaggacagcttgagcctgtgaggtcaaggct
Downstream sequence
gcagtgaaccaaaattttgcctctgcactccagcctgggcaacagagtgagacgtatctcaaaaaaaaaaaaaaagaaaaaagaaaaagaagaaagaaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate