Basic Information
VIS ID
TVIS30006436
Fusion event
HIV-BAZ1A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
35232589/34763383 (Hg38)
End
35232589/34763383 (Hg38)
Orient
-
Location type
Intronic
Target gene
BAZ1A
miRNAs that regulate target gene
hsa-mir-373-3p ; hsa-mir-375 ; hsa-mir-98-5p ; hsa-let-7b-5p
Nearest miRNA
hsa-mir-208a/Upstream/3748641; hsa-mir-1185-1/Downstream/2188926;
Nearest TSS
ENST00000550708/Upstream/1447; ENST00000557373/Downstream/8276;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/48393, chr14-CpG: 189/Downstream/110256
Upstream sequence
CTTAAAACCTTGTTTAAAACAGATGGGGTGGCTCTATCTCAACTTCTCCAACTGTGGTCCTTTTGCACTTTTGCAGTTCTAGGTTGCCTTGCTTCATACT
Downstream sequence
CATTTTCCTGCTTCCACAAGAATGGGGTTCAAATGTTTAAAAAAAAAAAAAAAAGCCGGGGGGAGGGGGATGATAAGAACAAGGAGCACAATGACTTCCC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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