VISDB Viral Integration Site DataBase

VIS ID

TVIS30006439

Fusion event

HIV-PRORP integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr14

Cytoband

q13.2

Reference genome

Start

End

35674817/35205611 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-514b-5p ; hsa-mir-513c-5p ; hsa-mir-2117 ; hsa-mir-148a-5p ; hsa-mir-7856-5p ; hsa-mir-3658 ; hsa-mir-744-3p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-431-5p ; hsa-mir-193a-5p ; hsa-mir-31-3p ; hsa-mir-4524a-3p ; hsa-mir-4726-3p ; hsa-mir-4781-3p ; hsa-mir-1182 ; hsa-mir-4524b-3p ; hsa-mir-1273e ; hsa-mir-8065 ; hsa-mir-4656 ; hsa-mir-7160-5p ; hsa-mir-202-3p ; hsa-mir-98-5p ; hsa-mir-4500 ; hsa-mir-4458 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-4721 ; hsa-mir-4699-5p ; hsa-mir-7162-3p ; hsa-mir-4446-3p ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-203b-3p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-6499-3p ; hsa-mir-2467-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-1827 ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-4459 ; hsa-mir-4257 ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-4695-5p

Nearest miRNA

hsa-mir-208a/Upstream/4190869; hsa-mir-1185-1/Downstream/1746698;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/82814, chr14-CpG: 31/Downstream/86583

Upstream sequence

aggtctcgctatgttacccaggctggtctcgaactcctgggctcaagcaatcctcccaccttggccttccatagtgttgagattaaaggcatgacccacc

Downstream sequence

atacccagTGATATCTGCTCTATTAACAGAGAAAAGCAGTTTCAGAAGTGAAAGAAAAGTTATTAGTGGTTTTTGTTTGTTTTAATTAGATATTTATATG