VISDB Viral Integration Site DataBase

VIS ID

TVIS30006441

Fusion event

HIV-BRMS1L integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr14

Cytoband

q13.2

Reference genome

Start

End

36325806/35856600 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-106b-5p ; hsa-mir-142-3p ; hsa-mir-181a-5p ; hsa-mir-196a-5p ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-377-5p ; hsa-mir-6086 ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-4733-3p ; hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-92b-3p ; hsa-mir-488-3p ; hsa-mir-4711-3p ; hsa-mir-431-5p ; hsa-mir-4635 ; hsa-mir-3163 ; hsa-mir-4311 ; hsa-mir-3662 ; hsa-mir-1185-2-3p ; hsa-mir-1185-1-3p ; hsa-let-7f-2-3p ; hsa-mir-4789-5p ; hsa-mir-3941 ; hsa-mir-4789-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-575 ; hsa-mir-4676-5p ; hsa-mir-6856-3p ; hsa-mir-6773-5p ; hsa-mir-6724-5p ; hsa-mir-7977 ; hsa-mir-6508-3p ; hsa-mir-4726-5p ; hsa-mir-4640-5p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-3934-5p ; hsa-mir-383-3p ; hsa-mir-6794-3p ; hsa-mir-6879-3p ; hsa-mir-4524a-3p ; hsa-mir-215-3p ; hsa-mir-6773-3p ; hsa-mir-1304-3p ; hsa-mir-4494 ; hsa-mir-4639-3p ; hsa-mir-1226-3p ; hsa-mir-5007-5p ; hsa-mir-4463 ; hsa-mir-3664-5p ; hsa-mir-4797-5p ; hsa-mir-4279 ; hsa-mir-3649 ; hsa-mir-6789-3p ; hsa-mir-6778-3p ; hsa-mir-4707-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4258 ; hsa-mir-4740-3p ; hsa-mir-140-3p ; hsa-mir-6133 ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-765 ; hsa-mir-6499-3p ; hsa-mir-4537 ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-4459 ; hsa-mir-1228-3p ; hsa-mir-1277-5p ; hsa-mir-1281 ; hsa-mir-1915-3p ; hsa-mir-4485-5p ; hsa-mir-4695-3p ; hsa-mir-4726-3p ; hsa-mir-4772-3p ; hsa-mir-498 ; hsa-mir-6736-3p ; hsa-mir-6764-5p ; hsa-mir-6787-3p ; hsa-mir-6814-5p ; hsa-mir-6890-3p ; hsa-mir-7641

Nearest miRNA

hsa-mir-208a/Upstream/4841858; hsa-mir-1185-1/Downstream/1095709;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/29776, chr14-CpG: 62/Downstream/647364

Upstream sequence

tgattatgacattagtaaatgtctgtcgagaaataagtctaaagaaagataaaatcaactataatcttccaaccagaggtaatcactgttaataAGTATG

Downstream sequence

TACATTTTTTTGGGGGGGGGtttgtttttgagacagagtcttgttctgtcaccccgggtggagtgtagtggcgcgatcttagctcactgcaaactctgcc