Basic Information
VIS ID
TVIS30006443
Fusion event
HIV-chr14 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
38352726/37883521 (Hg38)
End
38352726/37883521 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-208a/Upstream/931130; hsa-mir-1185-1/Downstream/9877474;
Nearest TSS
ENST00000550708/Upstream/56220; ENST00000553887/Downstream/18603;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/260550, chr14-CpG: 43/Downstream/324428
Nearby gene
TTC6(No orient, 40896)
Upstream sequence
gcattttgtgttgtcagtgttttggattttggcagttataacaggtgcacagtggtacctcattgttgttttaatttgcaattccttaataatatatgat
Downstream sequence
gttgagcatcttttcatttgcttactaaccatttgtgtatcttctttggtgaattggctgtaaaagtcttttgtccatttttaaattgagttgttcattt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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