Basic Information
VIS ID
TVIS30006445
Fusion event
HIV-MIA2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
39712765/39243561 (Hg38)
End
39712765/39243561 (Hg38)
Orient
-
Location type
Intronic
Target gene
MIA2
Nearest miRNA
hsa-mir-208a/Upstream/2291170; hsa-mir-1185-1/Downstream/8517434;
Nearest TSS
ENST00000550708/Upstream/9446; ENST00000554392/Downstream/21723;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/67743, chr14-CpG: 101/Downstream/23037
Nearest cancer related gene
MIA2(TSG, No orient, 0)
Upstream sequence
atttccctctgaaagtcagatgaaaagtcaacttgcaaaaggaagattaataagtgaaaaggcatacaaatttatttgatcacaattttacgtgacacac
Downstream sequence
gaaacttcagaatgaagaaccaggctgggggtggtggctcatgcctgtaatcccagcagtttgggaggccaaggcaggtggatcatctgaggtcaggagt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate