Basic Information
VIS ID
TVIS30006450
Fusion event
HIV-LOC105378178 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
49068167/48598964 (Hg38)
End
49068167/48598964 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105378178
Nearest miRNA
hsa-mir-208a/Upstream/837860; hsa-mir-1185-1/Downstream/1367435;
Nearest TSS
ENST00000550708/Upstream/107197; ENST00000557531/Downstream/478541;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/922578, chr14-CpG: 30/Downstream/986968
Nearby gene
LINC00648(No orient, 803950)
Upstream sequence
aaattcttctgccttgggatgctgttaatctataaccttacccccaaccctgtgctctctgaaacatgtgctgtgtcaactcagggttaaatggattaaa
Downstream sequence
ggcggtgcaagatgtgctttgttaaacagatgcttgaaagcagcatgctccttaagagtcatcaccactccctaatctcaagtacccagggacacaaaca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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