Basic Information
VIS ID
TVIS30006452
Fusion event
HIV-RNU6-189P integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
50368606/49901888 (Hg38)
End
50368606/49901888 (Hg38)
Orient
+
Location type
Intronic
Target gene
RNU6-189P
Nearest miRNA
hsa-mir-208a/Upstream/2140784; hsa-mir-1185-1/Downstream/64511;
Nearest TSS
ENST00000550708/Upstream/8796; ENST00000426751/Downstream/58774;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/7809, chr14-CpG: 43/Downstream/101409
Nearby gene
ARF6(No orient, 4834)
Upstream sequence
ATTAAAATTTTCACTCAGCTGATTATTTGTATACTTATATATAGATTTCTTTTAAGAAAAGTTTTatatggaatgcttcatgaatttgtgtcatccttgc
Downstream sequence
acaggggccatgtaatctctgtattgttccaattttagtatatgtgctgctgaagtgagcaTcccagttaaatttcaattagataaactatttttttagt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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