Basic Information
VIS ID
TVIS30006454
Fusion event
HIV-NID2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
52473791/52007073 (Hg38)
End
52473791/52007073 (Hg38)
Orient
+
Location type
Intronic
Target gene
NID2
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-181d-5p ; hsa-let-7a-5p
Nearest miRNA
hsa-mir-208a/Upstream/1707127; hsa-mir-1185-1/Downstream/1941354;
Nearest TSS
ENST00000550708/Upstream/3061; ENST00000553372/Downstream/851;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/17198, chr14-CpG: 160/Downstream/60790
Upstream sequence
CATCTGGGTAAATACTTGCCCTTTGTAAGCTATGTCTATAATTACTGAGGCAACCTTTTAACCAAAATCCTTAGTATTTTTAAAATATTTTCTAGGTAGG
Downstream sequence
AGGAAAAAAGTGACTAAAATGGTAACATAACTCATATTTCAATGTAAAGGAATCAGTCTTAAAAATTTTTACAATAGCTAAACCATTCAAGAATTTCCAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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