VISDB Viral Integration Site DataBase

VIS ID

TVIS30006455

Fusion event

HIV-STYX integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr14

Cytoband

q22.1

Reference genome

Start

End

53218378/52751660 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-130b-3p ; hsa-mir-93-5p ; hsa-mir-33a-5p ; hsa-mir-32-5p ; hsa-mir-376c-5p ; hsa-mir-376b-5p ; hsa-mir-3148 ; hsa-mir-3681-5p ; hsa-mir-4491 ; hsa-mir-4657 ; hsa-mir-6124 ; hsa-mir-6504-3p ; hsa-mir-6833-5p ; hsa-mir-6849-5p ; hsa-mir-7161-3p ; hsa-mir-499b-3p ; hsa-mir-499a-3p ; hsa-mir-582-5p ; hsa-mir-101-3p ; hsa-mir-3190-3p ; hsa-mir-5191 ; hsa-mir-634 ; hsa-mir-548c-3p ; hsa-mir-1277-5p ; hsa-mir-190a-3p ; hsa-mir-4789-5p ; hsa-mir-3941 ; hsa-mir-4797-5p ; hsa-mir-5011-5p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-8485 ; hsa-mir-329-3p ; hsa-mir-1273e ; hsa-mir-1273h-5p ; hsa-mir-1827 ; hsa-mir-30b-3p ; hsa-mir-34b-3p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-3689d ; hsa-mir-377-5p ; hsa-mir-3929 ; hsa-mir-4419b ; hsa-mir-4478 ; hsa-mir-455-3p ; hsa-mir-4649-3p ; hsa-mir-485-5p ; hsa-mir-550b-2-5p ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-665 ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6807-5p ; hsa-mir-6808-5p ; hsa-mir-6840-3p ; hsa-mir-6851-5p ; hsa-mir-6880-5p ; hsa-mir-6884-5p ; hsa-mir-6893-5p ; hsa-mir-7160-5p ; hsa-mir-7847-3p ; hsa-mir-873-5p ; hsa-mir-940

Nearest miRNA

hsa-mir-208a/Upstream/2451714; hsa-mir-1185-1/Downstream/1196767;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/20928, chr14-CpG: 87/Downstream/39286

Upstream sequence

cccttagtatctctccaagacggaattgtgaaacatttttaatttctcaaagtctaatggagtaaaaatggtatctcatttgatgttcttatttATCTTG

Downstream sequence

TAAGTTCAGTTGAGCATGTAATGGTTTTTAATGTTCTTTATTTTAACTTCATTTTTAAAATAGAGTATATTACGCATGGTACAAAAGTGAAAGGATATGT