Basic Information
VIS ID
TVIS30006462
Fusion event
HIV-ARID4A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
58830696/58363978 (Hg38)
End
58830696/58363978 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA14B
Target gene
ARID4A
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-21-5p ; hsa-mir-548as-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-6771-3p
Nearest miRNA
hsa-mir-208a/Upstream/3485785; hsa-mir-1185-1/Downstream/1282984;
Nearest TSS
ENST00000550708/Upstream/10524; ENST00000466065/Downstream/1497;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/64310, chr14-CpG: 70/Downstream/31845
Upstream sequence
AGGACTATTGTACCTAAATATGATACTGGGGAATGTTGCAAAATAGCTTTTCATATAGATTTGAGTTAGTAATATGCAACGTAATATATTTTTGCTTGGA
Downstream sequence
GCTTAGTTTCCCCTCCCCCTCAAATTCTTGGCACAAATGTTATGATTTGTTTTATTTCAGAAATTTCTACAGGGAGGTATTCAGAGGTACATGATTAAAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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