Basic Information
VIS ID
TVIS30006466
Fusion event
HIV-ZBTB1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
64978564/64511846 (Hg38)
End
64978564/64511846 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA14B
Target gene
ZBTB1
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-208a/Upstream/416721; hsa-mir-1185-1/Downstream/273780;
Nearest TSS
ENST00000550708/Upstream/6633; ENST00000554883/Downstream/24059;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/6384, chr14-CpG: 205/Downstream/28310
Upstream sequence
aactagccaacaaagcccaatctccaaaagcataacagtctgaggccattttgtgtaggtgcaaacccttgcaaatttgaacaacTACTATGTTTCAGCA
Downstream sequence
AAACATAATTGTTTCAGAGGAGAAAACAGCCAGCCGGGTGATGCTATATGTGTAGGCTGCAGTTAGAGTagtatgaagagccctagaccaggattgagga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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