Basic Information
VIS ID
TVIS30006496
Fusion event
HIV-POMT2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
77780333/77313990 (Hg38)
End
77780333/77313990 (Hg38)
Orient
+
Location type
Intronic
Target gene
POMT2
miRNAs that regulate target gene
hsa-mir-146b-5p ; hsa-mir-542-3p ; hsa-mir-219b-3p ; hsa-mir-5190
Nearest miRNA
hsa-mir-1260a/Upstream/47700; hsa-mir-1185-1/Downstream/16634236;
Nearest TSS
ENST00000550708/Upstream/1355; ENST00000553770/Downstream/6350;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/42561, chr14-CpG: 113/Downstream/6357
Upstream sequence
agagatggggtttcaccatgttggccaggctggtctcgaaactccaaacctcaggtgatccacctgcctcagccccccaaagtgctggggttataggtgt
Downstream sequence
gaaccaccgcacccagccTGGGCTCCAGATTTTTACTTCAAAAGTTTCCCAAGTAAAACCAGTTGTAACATTCATATTTCCTCCTGGCTTTTATTGCTTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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