Basic Information
VIS ID
TVIS30006499
Fusion event
HIV-CEP128 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
81201587/80735243 (Hg38)
End
81201587/80735243 (Hg38)
Orient
-
Location type
Intronic
Target gene
CEP128
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-375 ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-10a-5p ; hsa-mir-6755-3p ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-4762-5p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa
Nearest miRNA
hsa-mir-1260a/Upstream/3468953; hsa-mir-1185-1/Downstream/13212983;
Nearest TSS
ENST00000550708/Upstream/154818; ENST00000557096/Downstream/26349;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/873255, chr14-CpG: 29/Downstream/206123
Upstream sequence
ATGTCCATTTTAACACTATAGTACAGATTTTAACACTATAGTACAAGTCAAAATAAAAGGATAAAATTTGAAAATATGACTACGTAATATCAAGGGCCTT
Downstream sequence
ACAACAGCCTAAGCCAATAAGGACTGTCTCCATTTCGGGTTCACTCATAATCCATGTAACTTCTTTGAATTTTCATAGTATATTTGAAGAAAGAATATCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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