Basic Information
VIS ID
TVIS30006502
Fusion event
HIV-chr14 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
83187640/82721296 (Hg38)
End
83187640/82721296 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-1260a/Upstream/5455006; hsa-mir-1185-1/Downstream/11226930;
Nearest TSS
ENST00000550708/Upstream/78660; ENST00000554753/Downstream/74925;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/1187206, chr14-CpG: 45/Downstream/2808854
Upstream sequence
CAGGGCAGAGATGTATCTTGTTTGCTGGCTGGATTTGTTCTCACCTAACACAGCTAAGGCAAAGCCATCTATTATTGTCTCCTGGTTTTGAATGTTGTCT
Downstream sequence
GAGGAATATGGATAGATAGCTCAAGTTCCAGCAAAGATTTTTAAGTCAGCCTACGTGGATCTTTCCTCCCAAGCCCCACCACTGCAGCTCCAGGCTAACT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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