Basic Information
VIS ID
TVIS30006504
Fusion event
HIV-chr14 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
88196471/87730127 (Hg38)
End
88196471/87730127 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1260a/Upstream/10463837; hsa-mir-1185-1/Downstream/6218099;
Nearest TSS
ENST00000550708/Upstream/74833; ENST00000555913/Downstream/4171;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/2195993, chr14-CpG: 87/Downstream/262425
Nearby gene
GALC(No orient, 202887)
Upstream sequence
AATCTTTGGGTTTGTACCTTCCTTTCATTTGACCTTCCTAGCAAGCCAGTATAGGGTGTAGGACAGTATACATTAACCCAGCTAGGCAGGTATGATTCTG
Downstream sequence
AGCCAAGTTCCAACAAGATTCAAGAAAGGAggccgggcacggtggctcatgcctgtaatcccagcactttgggaggccgaggcaggtggatcacttgagg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate