Basic Information
VIS ID
TVIS30006508
Fusion event
HIV-chr14 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.11
Reference genome
GRCh37/hg19
Start
91330984/90864640 (Hg38)
End
91330984/90864640 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1260a/Upstream/13598350; hsa-mir-1185-1/Downstream/3083586;
Nearest TSS
ENST00000550708/Upstream/36512; ENST00000521081/Downstream/46829;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/48036, chr14-CpG: 134/Downstream/195249
Nearby gene
RPS6KA5(No orient, 6183)
Upstream sequence
tattggacttcataaaatttttggtcatcaaaggaaagcacttagaaagtagaaaagcaaactaaagagaagacatttatggtaaaatatcagacaaaaa
Downstream sequence
ccctcatatccataaaatataaaagactcctgcaagtcagtaagaaaaaaagacaacccaataaatatgaacaaatgacttgaacaggcacttaattgag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate