Basic Information
VIS ID
TVIS30006512
Fusion event
HIV-DGLUCY integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.11
Reference genome
GRCh37/hg19
Start
91627227/91160883 (Hg38)
End
91627227/91160883 (Hg38)
Orient
+
Location type
Intronic
Target gene
DGLUCY
miRNAs that regulate target gene
hsa-mir-375
Nearest miRNA
hsa-mir-1260a/Upstream/13894593; hsa-mir-1185-1/Downstream/2787343;
Nearest TSS
ENST00000550708/Upstream/542; ENST00000520130/Downstream/9158;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/99675, chr14-CpG: 87/Downstream/72854
Upstream sequence
ATTCTCTGGTGGCACCCATTTCCCTACTGTCTCCTGGGAGTGATACTGAAGGCTCTAAAAGGTCCTGCAAGAGAAAACAGATACCAAATTTGTCATTGAC
Downstream sequence
CTAAGTCCAAGCAAAATTTCACATTAAAAAAGACTCGTCTGGTTATGGTATAAGTGCCCAAGGAAAAACCATCAGCACCATCTAAAGTACTAGAGCAAGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate