Basic Information
VIS ID
TVIS30006515
Fusion event
HIV-TC2N integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.12
Reference genome
GRCh37/hg19
Start
92250925/91784581 (Hg38)
End
92250925/91784581 (Hg38)
Orient
+
Location type
Intronic
Target gene
TC2N
miRNAs that regulate target gene
hsa-mir-9-5p
Nearest miRNA
hsa-mir-1260a/Upstream/14518291; hsa-mir-1185-1/Downstream/2163645;
Nearest TSS
ENST00000550708/Upstream/3874; ENST00000553427/Downstream/14417;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/210049, chr14-CpG: 57/Downstream/51276
Upstream sequence
GTCAAGTTGAAGCTTTTAAACCAATAATATAGATTTTGGAATTTAAATGTGGTTCAAACAATCGTAATTAAGGTAAAAGATAATGGACAGCTACCACTAG
Downstream sequence
TCTATTCAGAGTAAGGAAAGGAAACAAGTTCCTAGAGGACTGGCAAGTTAACAAGTGTTATGTTGTTTTATACAAATTGTACCAAGATTTTAAAATAATC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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