VISDB Viral Integration Site DataBase

VIS ID

TVIS30006521

Fusion event

HIV-PAPOLA integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr14

Cytoband

q32.2

Reference genome

Start

End

96976550/96510213 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-130b-3p ; hsa-mir-93-5p ; hsa-mir-877-5p ; hsa-mir-320a ; hsa-let-7b-5p ; hsa-mir-1910-3p ; hsa-mir-6511a-5p ; hsa-mir-4662a-5p ; hsa-mir-153-5p ; hsa-mir-3065-5p ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-6516-5p ; hsa-mir-6807-5p ; hsa-mir-455-3p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-4327 ; hsa-mir-6499-3p ; hsa-mir-1827 ; hsa-mir-665 ; hsa-mir-4459 ; hsa-mir-4695-5p ; hsa-mir-8485 ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-7977 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-2277-3p ; hsa-mir-4526 ; hsa-mir-3660 ; hsa-mir-383-3p ; hsa-mir-6871-5p

Nearest miRNA

hsa-mir-1260a/Upstream/1372227; hsa-mir-1185-1/Downstream/3599206;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/7179, chr14-CpG: 43/Downstream/82393

Upstream sequence

TTTTTCAAATTTTTATTCCCTCTATATTTTGTCCAGAAATTGGATTCTTGGATTTTACGGCAGTTTTTATAATTTTGAGGTTGATCAAGAATAGTGTTTG

Downstream sequence

TCATTTTGATCATTAGAAACATTTAAATTACATTTCCTGAAATTAGTGTCTGTAATACTATGACTTACTATAATCTTGACTATTTTCTGATACATTTTCA