Basic Information
VIS ID
TVIS30006524
Fusion event
HIV-LOC107984706 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
98517363/98051026 (Hg38)
End
98517363/98051026 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107984706
Nearest miRNA
hsa-mir-1260a/Upstream/2913040; hsa-mir-1185-1/Downstream/2058393;
Nearest TSS
ENST00000550708/Upstream/72902; ENST00000557072/Downstream/85048;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/831417, chr14-CpG: 53/Downstream/1067042
Nearby gene
LINC01550(No orient, 72902)
Upstream sequence
agaacaaattatatctaatgcacaataacaaaaatagtaaaaaaaaaattcaaaaagaaatgacaaaaaataggaaaaaaatgagcaaatcaatgaaacc
Downstream sequence
aaatgatggttctttgaaatgatgagtaataaaatttatacctttggttaaattgatcaagaaaagaagatagaaagcaatatcagacataaaggagggg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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