VISDB Viral Integration Site DataBase

VIS ID

TVIS30006535

Fusion event

HIV-TECPR2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr14

Cytoband

q32.31

Reference genome

Start

End

102861508/102395171 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-92a-3p ; hsa-mir-32-5p ; hsa-mir-92b-3p ; hsa-mir-143-5p ; hsa-mir-3944-5p ; hsa-mir-6845-5p ; hsa-mir-6762-5p ; hsa-mir-6508-3p ; hsa-mir-6722-3p ; hsa-mir-1909-3p ; hsa-mir-6836-5p ; hsa-mir-6132 ; hsa-mir-4742-3p ; hsa-mir-4793-5p ; hsa-mir-5196-3p ; hsa-mir-500b-5p ; hsa-mir-362-5p ; hsa-mir-216b-5p ; hsa-mir-216a-5p ; hsa-mir-4737 ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-629-3p ; hsa-mir-6818-3p ; hsa-mir-4507 ; hsa-mir-3940-5p ; hsa-mir-6873-3p ; hsa-mir-6867-3p ; hsa-mir-4713-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-642a-5p ; hsa-mir-494-5p ; hsa-mir-410-5p ; hsa-mir-323b-5p ; hsa-mir-942-5p ; hsa-mir-600 ; hsa-mir-29a-5p ; hsa-mir-3920 ; hsa-mir-6845-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-6832-3p ; hsa-mir-5088-3p ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-4667-3p ; hsa-mir-1470 ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-4715-3p ; hsa-mir-6071 ; hsa-mir-6829-5p ; hsa-mir-6882-3p ; hsa-mir-661 ; hsa-mir-6781-3p ; hsa-mir-2682-3p ; hsa-mir-3692-5p ; hsa-mir-93-3p ; hsa-mir-6728-3p ; hsa-mir-7107-5p ; hsa-mir-6852-5p ; hsa-mir-1234-3p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-mir-15b-5p

Nearest miRNA

hsa-mir-1185-1/Upstream/834749; hsa-mir-12121/Downstream/144473;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/31635, chr14-CpG: 309/Downstream/111809

Upstream sequence

CTCTTAACCTAGATCACGATCTGACACTAGATATATTTATAGTCCATGAAAATACCCTGAAAGCTTTCAAGTACCAGATGAAAGTGAGCTCCTTCATTAC

Downstream sequence

CACCTCAACTCACTGTAGGCGGCTTTTCATGTGCAACAGCTAAGCTTTAAGAGGGCTGGGACTGTGACCTACTTTATTTTGTATTGTTATAGCAGCTCAC