Basic Information
VIS ID
TVIS30006538
Fusion event
HIV-chr14 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.32
Reference genome
GRCh37/hg19
Start
103742526/103276189 (Hg38)
End
103742526/103276189 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1185-1/Upstream/736463; hsa-mir-12121/Downstream/841216;
Nearest TSS
ENST00000550708/Upstream/68089; ENST00000560877/Downstream/56178;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/1634, chr14-CpG: 128/Downstream/2706
Nearby gene
EIF5(No orient, 57813)
Upstream sequence
ttgttggtctatagagttgcaaatgatttttatgtgttggctttgtaaccagcaaccttgttaaactctcttattcattttaacaatttatgccaggcac
Downstream sequence
agtggctcatgcctgtaatctcagcactttgggaggccaaggtgggaggactgcttgagcccaggagttccagactggcctgaacaacatagtgagactc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate