VISDB Viral Integration Site DataBase

VIS ID

TVIS30006539

Fusion event

HIV-EIF5 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr14

Cytoband

q32.32

Reference genome

Start

End

103805923/103339586 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-21-5p ; hsa-mir-16-5p ; hsa-mir-186-5p ; hsa-mir-125b-5p ; hsa-mir-26a-5p ; hsa-mir-26b-5p ; hsa-mir-4280 ; hsa-mir-4796-3p ; hsa-mir-380-3p ; hsa-mir-569 ; hsa-mir-2053 ; hsa-mir-4495 ; hsa-mir-4698 ; hsa-mir-5100 ; hsa-mir-1257 ; hsa-mir-3149 ; hsa-mir-5000-5p ; hsa-mir-24-3p ; hsa-mir-149-5p ; hsa-mir-4284 ; hsa-mir-6870-3p ; hsa-mir-640 ; hsa-mir-4501 ; hsa-mir-8066 ; hsa-mir-1262 ; hsa-mir-630 ; hsa-mir-10b-3p ; hsa-mir-670-5p ; hsa-mir-3941 ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-4308 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-142-3p ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-3681-3p ; hsa-mir-3657 ; hsa-mir-511-3p ; hsa-mir-3910 ; hsa-mir-7844-5p ; hsa-mir-568 ; hsa-mir-4669 ; hsa-mir-1302 ; hsa-mir-4298 ; hsa-mir-4753-5p ; hsa-mir-661

Nearest miRNA

hsa-mir-1185-1/Upstream/799860; hsa-mir-12121/Downstream/777819;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/4262, chr14-CpG: 136/Downstream/45294

Upstream sequence

GCCCTTACAAAGTAACAGGGATGTTTATGCATTGACCTTTTTGAACAACTATGGTATGGGCCATGCACTTGCAGACACTCTTATTTGGGTAATAGAGTTG

Downstream sequence

TCAACTTAGAACACATAAAAAAGATTGTTAACACCAAGGTGTCTATTTGCAGTTTTGTCACAACAACAAAAAAGCCCAACGGTACCTTCTTCATGGTTTG