Basic Information
VIS ID
TVIS30006542
Fusion event
HIV-MARK3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.32
Reference genome
GRCh37/hg19
Start
103900728/103434391 (Hg38)
End
103900728/103434391 (Hg38)
Orient
-
Location type
Intronic
Target gene
MARK3
miRNAs that regulate target gene
hsa-mir-331-3p
Nearest miRNA
hsa-mir-1185-1/Upstream/894665; hsa-mir-12121/Downstream/683014;
Nearest TSS
ENST00000550708/Upstream/5198; ENST00000558611/Downstream/31323;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/48020, chr14-CpG: 322/Downstream/86335
Upstream sequence
gcaacgagaagtgtcatgaactgcacagattcctccatgtttagTAGGCATCCCAGCATTCCGTGACCGGGCTAAGTATAAAGCAGGGAGTGCaagttac
Downstream sequence
ccacagaagctactgactgtgaaattttagctacagcatgatcctgccaaactgaaagaggtaggcattagtaaggaaaaattaagaggggcaaaagcat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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