Basic Information
VIS ID
TVIS30006547
Fusion event
HIV-BRF1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.33
Reference genome
GRCh37/hg19
Start
105761765/105295428 (Hg38)
End
105761765/105295428 (Hg38)
Orient
+
Location type
Intronic
Target gene
BRF1
miRNAs that regulate target gene
hsa-mir-877-3p ; hsa-mir-92a-3p
Nearest miRNA
hsa-mir-1185-1/Upstream/144564; hsa-mir-4507/Downstream/325688;
Nearest TSS
ENST00000550708/Upstream/46024; ENST00000548265/Downstream/5040;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/23101, chr14-CpG: 188/Downstream/4793
Nearest cancer related gene
BRF1(TSG, No orient, 0)
Upstream sequence
ttggcgttggctcacacctgtcatcctagaactttgagaggccaagacgggagaattacttgagcccaggagttccagacgagcctggtcaacatggcaa
Downstream sequence
aaccccatctctacaagaaaaatacaaaaattagctgggtatagtagggcgcacctgtagtaccagcaactcaggaggctgagctgggagggtcactgga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate