Basic Information
VIS ID
TVIS30006549
Fusion event
HIV-TEX22 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.33
Reference genome
GRCh37/hg19
Start
105875621/105409284 (Hg38)
End
105875621/105409284 (Hg38)
Orient
+
Location type
Intronic
Target gene
TEX22
miRNAs that regulate target gene
hsa-mir-1182 ; hsa-mir-1270 ; hsa-mir-129-5p ; hsa-mir-1304-3p ; hsa-mir-139-3p ; hsa-mir-215-3p ; hsa-mir-3664-5p ; hsa-mir-4524a-3p ; hsa-mir-4524b-3p ; hsa-mir-4531 ; hsa-mir-4639-3p ; hsa-mir-620 ; hsa-mir-6773-3p ; hsa-mir-6794-3p ; hsa-mir-7850-5p ; hsa-mir-1197 ; hsa-mir-18a-3p ; hsa-mir-18b-3p ; hsa-mir-3157-3p ; hsa-mir-3943 ; hsa-mir-4323 ; hsa-mir-4477b ; hsa-mir-6769a-3p ; hsa-mir-6816-3p ; hsa-mir-8080
Nearest miRNA
hsa-mir-1185-1/Upstream/258420; hsa-mir-4507/Downstream/211832;
Nearest TSS
ENST00000550708/Upstream/10701; ENST00000551236/Downstream/10455;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/10156, chr14-CpG: 79/Downstream/1750
Upstream sequence
tacaatccgcctgcctcctgtctacaggaccccttgtttcctgggccccagcttgttctccttggtttatcctttgttttggtggagtacatctagcagc
Downstream sequence
ttcctccaaaagggttcagaggatgtgaaagtttttgagactctaaagatatgaaaatatctttattctgcctgtatgcttgaatgacaccttggttggg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate