Basic Information
VIS ID
TVIS30006550
Fusion event
HIV-MTA1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.33
Reference genome
GRCh37/hg19
Start
105896808/105430471 (Hg38)
End
105896808/105430471 (Hg38)
Orient
-
Location type
Intronic
Target gene
MTA1
miRNAs that regulate target gene
hsa-mir-661 ; hsa-mir-559 ; hsa-mir-30c-5p ; hsa-mir-125a-3p ; hsa-mir-543 ; hsa-mir-1323 ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6734-5p ; hsa-mir-1226-5p ; hsa-mir-3191-5p ; hsa-mir-3151-5p ; hsa-mir-92a-2-5p ; hsa-mir-4710 ; hsa-mir-486-3p ; hsa-mir-6799-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-657 ; hsa-mir-3665 ; hsa-mir-6134 ; hsa-mir-6738-5p ; hsa-mir-5194 ; hsa-mir-1914-3p ; hsa-mir-423-5p ; hsa-mir-3184-5p ; hsa-mir-4721 ; hsa-mir-3616-3p ; hsa-mir-17-3p ; hsa-mir-1205 ; hsa-mir-1184 ; hsa-mir-3158-5p ; hsa-mir-6728-3p ; hsa-mir-4999-3p ; hsa-mir-3141 ; hsa-mir-22-3p ; hsa-mir-3180-3p ; hsa-mir-3180 ; hsa-mir-3196 ; hsa-mir-6816-5p
Nearest miRNA
hsa-mir-1185-1/Upstream/279607; hsa-mir-4507/Downstream/190645;
Nearest TSS
ENST00000550708/Upstream/10452; ENST00000494026/Downstream/8201;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/10223, chr14-CpG: 25/Downstream/14901
Upstream sequence
cacacacatttatcaattaagttcttagttggggtatggctcatgatgcccaaaacaattacaatagtagcatcgaggagcaatgaccacagatcgccat
Downstream sequence
cacagatagaatcatggttaaaaagttggaaatgttgagagaattaccaaaacgtgacagcaacacgtagtgagcacctgctgttggaaaaatggcaccg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate