Basic Information
VIS ID
TVIS30006553
Fusion event
HIV-chr14 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Reference genome
GRCh37/hg19
Start
106564775
End
106564775
Orient
+
Location type
Intergenic
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Nearby gene
ADAM6(No orient, 126417)
Upstream sequence
gacatttgggctggctccaagtctttgctattgtcaatagtgacacaataaacataagtgtgcatgtgtctttatagcagcatgatttataatcctttgg
Downstream sequence
gtatatagcaagtaatgggactgctgggtcaaatggtatttctagttctagatccttgaggatcgccacactgtcttccacaatggttgaactagtttac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate