Basic Information
VIS ID
TVIS30006558
Fusion event
HIV-IGH integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.33
Reference genome
GRCh37/hg19
Start
107155571/106699554 (Hg38)
End
107155571/106699554 (Hg38)
Orient
-
Location type
Intronic
Target gene
IGH
Nearest miRNA
hsa-mir-1185-1/Upstream/840001; hsa-mir-5195/Downstream/151331;
Nearest TSS
ENST00000550708/Upstream/4157; ENST00000519437/Downstream/4732;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/216743, chr14-CpG: 17/Downstream/113304
Upstream sequence
ttatgggtaatattctactaacagcccttagaatttacccattttcatcattcccaaaaggcctagttaatgtgttacctacaaaaatagtttactcccc
Downstream sequence
catatttaatgctttagcactgtttactgatagatctggtaaatatggaaaagcagcagtctggtggacaccacacaattcattcactcaatctgggttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate