Basic Information
VIS ID
TVIS30006559
Fusion event
HIV-HERC2P3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q11.1
Reference genome
GRCh37/hg19
Start
20627850/20422597 (Hg38)
End
20627850/20422597 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
HERC2P3
Nearest miRNA
hsa-mir-10393/Downstream/410198;
Nearest TSS
ENST00000557528/Upstream/70236; ENST00000560839/Downstream/119203;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/63641, chr15-CpG: 58/Downstream/83514
Upstream sequence
gttttgctctgtgacactcgcaaatctcatctcaaaatgtaatccccacatgtcccaggagggacctggtggaaggtgattggattatgggggcagtttc
Downstream sequence
ccccatgatgttctcatgacagtgggtgaattctcacaacagctgatggttttaaagtgtggcacttccttgttttcttgctctctgtctcctaccacca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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