Basic Information
VIS ID
TVIS30006564
Fusion event
HIV-WHAMMP2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
28986995/28741849 (Hg38)
End
28986995/28741849 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
WHAMMP2
Nearest miRNA
hsa-mir-1268a/Upstream/251004; hsa-mir-10393/Downstream/2323183;
Nearest TSS
ENST00000557528/Upstream/3418; ENST00000559709/Downstream/106826;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/3498, chr15-CpG: 93/Downstream/46883
Upstream sequence
cctccaggttcaagtgactcttctgcctcagcctcctgagtagctgggattacaggtgtgcactaccatgcccagctaactttctttgtatttttagtag
Downstream sequence
agacggggtttcaccatgttggccagactggttcgaactcctggcctcaagtgagccacccgtctcagcctcccaaagtgctgggattacaagcgtgagc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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