Basic Information
VIS ID
TVIS30006565
Fusion event
HIV-FAM189A1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
29615070/29322866 (Hg38)
End
29615070/29322866 (Hg38)
Orient
-
Location type
Intronic
Target gene
FAM189A1
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-1268a/Upstream/832021; hsa-mir-10393/Downstream/1742166;
Nearest TSS
ENST00000557528/Upstream/53037; ENST00000536835/Downstream/129933;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/52927, chr15-CpG: 238/Downstream/246965
Upstream sequence
ccaccctccttcccttcctgcccacttttcccctttaaatactgaagacctcaaaatcctcttgggaaaaagtaagatcacagattgttcctgtggtttt
Downstream sequence
gtgttcctttttcccggatgcatccttaaccttggttaaataaacctctaaattgcttgagacctgtctcagatacctttcggtttacggtaataatagt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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