Basic Information
VIS ID
TVIS30006570
Fusion event
HIV-ARHGAP11A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
32931774/32639573 (Hg38)
End
32931774/32639573 (Hg38)
Orient
-
Location type
UTR3
Target gene
ARHGAP11A
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-375 ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-19b-3p ; hsa-mir-665 ; hsa-mir-3622b-5p ; hsa-mir-7160-5p ; hsa-mir-873-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-6840-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-5197-5p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-3116 ; hsa-mir-1254 ; hsa-mir-6730-5p ; hsa-mir-5702 ; hsa-mir-766-3p ; hsa-mir-6849-3p ; hsa-mir-3690 ; hsa-mir-4797-5p ; hsa-mir-508-5p ; hsa-mir-570-5p ; hsa-mir-548ba ; hsa-mir-548ai ; hsa-mir-548ag ; hsa-mir-548m
Nearest miRNA
hsa-mir-1268a/Upstream/1574432; hsa-mir-10393/Downstream/1742496;
Nearest TSS
ENST00000557528/Upstream/6748; ENST00000470349/Downstream/2103;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/23824, chr15-CpG: 217/Downstream/77756
Upstream sequence
GTTGTCTGCTTTAAACAATTTTTAAATTTTAAAAATGCATTAACGTCTTTTTATATCCATCAAGGGAAGGATGAAATGTTGAATTTGAAGACTAATTCAG
Downstream sequence
TAAGAAGTCCTAGGGGTTTAACTGTACATACTACCTGAACTGGCTTTTCTGAGAGATGAATCAATAATGAAACATGTCTGTTTTAAAAACTACCACATGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate