Basic Information
VIS ID
TVIS30006571
Fusion event
HIV-FMN1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
33349082/33056881 (Hg38)
End
33349082/33056881 (Hg38)
Orient
-
Location type
Intronic
Target gene
FMN1
miRNAs that regulate target gene
hsa-mir-136-3p ; hsa-mir-493-3p ; hsa-mir-432-5p ; hsa-mir-340-5p ; hsa-mir-219b-3p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-25-3p ; hsa-mir-32-5p ; hsa-mir-6504-3p ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-5698 ; hsa-mir-143-5p ; hsa-mir-3907 ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6499-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-6515-3p ; hsa-mir-1236-3p ; hsa-mir-6777-3p
Nearest miRNA
hsa-mir-1268a/Upstream/1991740; hsa-mir-10393/Downstream/1325188;
Nearest TSS
ENST00000557528/Upstream/130620; ENST00000634750/Downstream/11003;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/337386, chr15-CpG: 32/Downstream/137841
Upstream sequence
gaactacaggtacatgtagcaacatatatgattctcacaagcataacgttaacagaaagaagccagacacaaaatgagttaatttatattaagttcaaaa
Downstream sequence
gcagatgaaactaggccgggcacagtggctcacacctgtaatcccagcgctttgggaggctgaggcaggcgatcactggaggtcaggaattcaagaccag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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