VISDB Viral Integration Site DataBase

VIS ID

TVIS30006572

Fusion event

HIV-EMC7 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr15

Cytoband

q14

Reference genome

Start

End

34390929/34098728 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-26b-5p ; hsa-mir-218-5p ; hsa-mir-6874-5p ; hsa-mir-505-5p ; hsa-mir-3194-5p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-6858-3p ; hsa-mir-190a-3p ; hsa-mir-374b-5p ; hsa-mir-5011-5p ; hsa-mir-374a-5p ; hsa-mir-410-3p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-369-3p ; hsa-mir-3163 ; hsa-mir-590-3p ; hsa-mir-1277-5p ; hsa-mir-4282 ; hsa-mir-5692a ; hsa-mir-548s ; hsa-mir-4684-5p ; hsa-mir-3926 ; hsa-mir-3190-5p ; hsa-mir-6771-3p ; hsa-mir-3675-3p ; hsa-mir-548c-3p ; hsa-mir-6849-3p ; hsa-mir-2355-5p ; hsa-mir-6778-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4530 ; hsa-mir-1207-3p ; hsa-mir-646 ; hsa-mir-7977 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-342-3p ; hsa-mir-3934-5p ; hsa-mir-1228-3p ; hsa-mir-5089-5p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-1224-3p ; hsa-mir-186-3p ; hsa-mir-3973 ; hsa-mir-1278 ; hsa-mir-8054 ; hsa-mir-548k ; hsa-mir-548av-5p

Nearest miRNA

hsa-mir-1268a/Upstream/3033587; hsa-mir-10393/Downstream/283341;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/59451, chr15-CpG: 35/Downstream/2885

Upstream sequence

ttttttttttttgtatttttagtagagatggggtttttccatgttggccaggctggtctcgaactcctgacctctggtgatccgcctgcctcggcctccc

Downstream sequence

aaagtgctaggattacaggtatgagccaccgtacccagccCTGACTCAACCAATTTCAAAACATTTTTTCAGATCCAGAAAAAAACAAACTGATGACAGT