Basic Information
VIS ID
TVIS30006578
Fusion event
HIV-BUB1B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q15.1
Reference genome
GRCh37/hg19
Start
40478576/40186375 (Hg38)
End
40478576/40186375 (Hg38)
Orient
-
Location type
Intronic
Target gene
BUB1B
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-22-3p
Nearest miRNA
hsa-mir-1233-1/Upstream/3213474; hsa-mir-10393/Downstream/1505210;
Nearest TSS
ENST00000557528/Upstream/903; ENST00000558972/Downstream/13663;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/24880, chr15-CpG: 32/Downstream/52668
Upstream sequence
GTTTTCCCTCTTATCCTGCTTTTTCCTTCTGGACATATTTTTCCTCTTTCTTCCTAATCCTTAGCATTTCTGTTTTTAAGAAAAAGTATAGTAGCTGGTG
Downstream sequence
GTTAAATAAACAAGCCAGCCTGAGATTTAGTCTAATGCTTAACATTGCCTAGttctttttttttttttttttttttttttgagatggagtctcgctgtgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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