VISDB Viral Integration Site DataBase

VIS ID

TVIS30006579

Fusion event

HIV-KNSTRN integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr15

Cytoband

q15.1

Reference genome

Start

End

40684483/40392282 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-222-3p ; hsa-mir-186-5p ; hsa-mir-3153 ; hsa-mir-6733-5p ; hsa-mir-6739-5p ; hsa-mir-4668-5p ; hsa-mir-1303 ; hsa-mir-8082 ; hsa-mir-4534 ; hsa-mir-1273f ; hsa-mir-5587-5p ; hsa-mir-4697-3p ; hsa-mir-6801-5p ; hsa-mir-6733-3p ; hsa-mir-4302 ; hsa-mir-211-3p ; hsa-mir-7845-5p ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-4711-3p ; hsa-mir-196a-3p ; hsa-mir-3135a ; hsa-mir-873-3p ; hsa-mir-766-3p ; hsa-mir-6849-3p ; hsa-mir-759 ; hsa-mir-5586-3p ; hsa-mir-892a ; hsa-mir-508-5p ; hsa-mir-4797-5p ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-3926 ; hsa-mir-497-3p ; hsa-mir-1247-3p ; hsa-mir-1273g-3p ; hsa-mir-1281 ; hsa-mir-1976 ; hsa-mir-3157-5p ; hsa-mir-3653-5p ; hsa-mir-4252 ; hsa-mir-4279 ; hsa-mir-4485-5p ; hsa-mir-4532 ; hsa-mir-4691-3p ; hsa-mir-4722-3p ; hsa-mir-4793-3p ; hsa-mir-498 ; hsa-mir-6727-3p ; hsa-mir-6747-3p ; hsa-mir-6778-3p ; hsa-mir-7703 ; hsa-mir-129-5p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-5702 ; hsa-mir-627-5p ; hsa-mir-8055 ; hsa-mir-8081 ; hsa-mir-937-5p

Nearest miRNA

hsa-mir-1233-1/Upstream/3419381; hsa-mir-10393/Downstream/1299303;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/8855, chr15-CpG: 188/Downstream/48448

Upstream sequence

cgtgtttttttttttccaacttttaagttcaggggtacacgtacagggtgtgtaggcttgttacacaggtaaacgtgtgccatggtggttagctgcacag

Downstream sequence

atcatcccatcacctaggtattgagcccagcatccattagctattcttcttgatgcacttcctcctccacccccaatagtaacatcttacattatcctgg