Basic Information
VIS ID
TVIS30006582
Fusion event
HIV-chr15 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q15.1
Reference genome
GRCh37/hg19
Start
41437620/41145422 (Hg38)
End
41437620/41145422 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1233-1/Upstream/4172521; hsa-mir-10393/Downstream/546163;
Nearest TSS
ENST00000557528/Upstream/29068; ENST00000561280/Downstream/44948;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/28764, chr15-CpG: 84/Downstream/85208
Nearby gene
INO80(No orient, 29176)
Upstream sequence
aattctcctacttcagcctcccaagtagctgggattacaggcacatgccaccacgcccggctaatttttgtatttttagtagagatggggttacatcatg
Downstream sequence
ttggacaggctggtctagaactcctgaccttgtgatctgcccacctcagcctcccaaaatgctgggattacaggcgtgagccactgtgcccagccaaggg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate