Basic Information
VIS ID
TVIS30006583
Fusion event
HIV-NUSAP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q15.1
Reference genome
GRCh37/hg19
Start
41632833/41340635 (Hg38)
End
41632833/41340635 (Hg38)
Orient
-
Location type
Intronic
Target gene
NUSAP1
miRNAs that regulate target gene
hsa-let-7b-5p
Nearest miRNA
hsa-mir-1233-1/Upstream/4367734; hsa-mir-10393/Downstream/350950;
Nearest TSS
ENST00000557528/Upstream/7722; ENST00000557840/Downstream/1761;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/7493, chr15-CpG: 22/Downstream/61660
Upstream sequence
ATATGCTGATAACTAACATCTGCACCTTCAGCACAACTCTTGAACACCACCTCATATCATTCAACCTCCTCACTGGGTTCTGCCACAGGTGCCTCACTTC
Downstream sequence
ATGCATTTTTGTATGTTTGGTGAGATTTTGAAGGTATATTAAGAGAGTATTAGAAAAATCAAGAATGCCTGAATTCTGCCCTGCCAATCATCCCCTTCCC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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