Basic Information
VIS ID
TVIS30006587
Fusion event
HIV-EHD4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q15.1
Reference genome
GRCh37/hg19
Start
42222792/41930594 (Hg38)
End
42222792/41930594 (Hg38)
Orient
-
Location type
Intronic
Target gene
EHD4
miRNAs that regulate target gene
hsa-let-7b-5p ; hsa-mir-10a-5p ; hsa-mir-3940-3p ; hsa-mir-651-3p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-6873-3p ; hsa-mir-4768-5p ; hsa-mir-580-5p ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-542-3p ; hsa-mir-617 ; hsa-mir-372-5p ; hsa-mir-616-5p ; hsa-mir-371a-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-4698 ; hsa-mir-8063 ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-661 ; hsa-mir-4252 ; hsa-mir-6776-5p ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-6742-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-508-5p ; hsa-mir-5186
Nearest miRNA
hsa-mir-1233-1/Upstream/64043; hsa-mir-10393/Downstream/268976;
Nearest TSS
ENST00000557528/Upstream/9177; ENST00000499478/Downstream/41958;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/11091, chr15-CpG: 81/Downstream/41364
Upstream sequence
AATGTTTCTTCAGGCTACAGTTTTCTAAAGAGAAATGTTAAACCAACGGGATGACAACTGGGGTCATAAAGGGCTAGAAAGCAACTTCTGACCTGAAGAC
Downstream sequence
CCCACCCCTCGCCCTGCCCTGTTCCTCTTTTCAAACATCTTGGCATTGCACAAGTGTCCTGCATGCCTGTGGACAACAGCTGGCACTGCAGACCAGCTCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate