Basic Information
VIS ID
TVIS30006589
Fusion event
HIV-TMEM87A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q15.1
Reference genome
GRCh37/hg19
Start
42553642/42261444 (Hg38)
End
42553642/42261444 (Hg38)
Orient
+
Location type
Intronic
Target gene
TMEM87A
miRNAs that regulate target gene
hsa-mir-30a-5p ; hsa-mir-1-3p ; hsa-mir-16-5p ; hsa-mir-107 ; hsa-mir-19a-3p
Nearest miRNA
hsa-mir-1233-1/Upstream/61778; hsa-mir-10393/Downstream/1532215;
Nearest TSS
ENST00000557528/Upstream/23969; ENST00000561871/Downstream/10157;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/53081, chr15-CpG: 32/Downstream/11810
Upstream sequence
ACACCCTAACTAGTAAATATAATAACACAGCATCAGTAGACAAAACATTTCCAATTAACCACAAACAAGTGAATAAAACCCTGCTGGGAACTAGAAAATA
Downstream sequence
GTATCAAACCAAAATGGCCATTCAATTTTTCTATCAGAATAATAAACATTTAAGAATGACAAAGCTTTAGATATAGGATGTATGCTTAGGAtagaagaag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate