Basic Information
VIS ID
TVIS30006599
Fusion event
HIV-chr15 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
51954113/51661916 (Hg38)
End
51954113/51661916 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/347807; hsa-mir-11181/Downstream/615201;
Nearest TSS
ENST00000557528/Upstream/39083; ENST00000558709/Downstream/19437;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/38717, chr15-CpG: 25/Downstream/19420
Nearby gene
SCG3(No orient, 19437)
Upstream sequence
aatggtggaatgcagatatctctttgatatcatggtttgttttttttgagacagagtcacgctctgtcacccaggctggagtacagtggcacgatctcgg
Downstream sequence
ctccctgcaatctcagcctcccaggttcaagcaattcccttgcctcagcctcccaagtagctgagattacaggcttgcaccaccatgcccagctaatttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate