Basic Information
VIS ID
TVIS30006608
Fusion event
HIV-MINDY2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
59070636/58778437 (Hg38)
End
59070636/58778437 (Hg38)
Orient
+
Location type
Intronic
Target gene
MINDY2
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-375 ; hsa-mir-124-3p ; hsa-mir-192-5p ; hsa-mir-619-5p ; hsa-mir-6513-5p ; hsa-mir-3942-3p ; hsa-mir-5089-5p ; hsa-mir-6728-5p ; hsa-mir-769-3p ; hsa-mir-450b-3p ; hsa-mir-5100 ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-3147 ; hsa-mir-4425 ; hsa-mir-6851-3p ; hsa-mir-4252 ; hsa-mir-1273g-3p ; hsa-mir-6504-3p ; hsa-mir-4781-3p ; hsa-mir-4438 ; hsa-mir-409-3p ; hsa-mir-510-3p ; hsa-mir-6077 ; hsa-mir-7-5p ; hsa-mir-6759-3p ; hsa-mir-4670-3p ; hsa-mir-3185 ; hsa-mir-4802-3p ; hsa-mir-494-3p ; hsa-mir-5096 ; hsa-mir-197-3p ; hsa-mir-411-5p ; hsa-mir-5580-5p ; hsa-mir-6832-5p ; hsa-mir-6823-5p ; hsa-mir-4524a-3p ; hsa-mir-4524b-3p ; hsa-mir-4435 ; hsa-mir-4755-3p ; hsa-mir-3190-5p
Nearest miRNA
hsa-mir-10393/Upstream/3405403; hsa-mir-11181/Downstream/392746;
Nearest TSS
ENST00000557528/Upstream/7075; ENST00000559745/Downstream/17640;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/6550, chr15-CpG: 40/Downstream/86409
Upstream sequence
TTTCCCAATTTTTTTCTTTGCTTAGTATAAGCTGAGATTATCTCCTGTTCCAAGTCATGGGAGGAATGCCAGGGTCCTGAAGCAGGATTTTTTTTATATA
Downstream sequence
AAGTTGGTTTCTCCAAACATCAAACCTAGAAACTGTAAAATAAGGATTAATATATTTGATTCTGTAAAATAAAAAAAAGCTTAAAAAAACAGACACACAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate